1pv4_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	X-RAY CRYSTAL STRUCTURE OF THE RHO TRANSCRIPTION TERMINATION FACTOR IN COMPLEX WITH SINGLE STRANDED DNA (Transcription termination factor rho)
reference	Skordalakes et al. 'Cell(Cambridge,Mass.)' 114 135 2003
source	Escherichia coli
experiment	X-ray (resolution=3.00, R-factor=0.271)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;Nucleic acid-binding proteins;Rho termination factor, N-terminal domain;
sequence family	ATP synthase alpha/beta family, nucleoti; Rho termination factor, RNAbinding doma; Rho termination factor, Nterminal domai; Ribonuclease B OB domain;
redundant complexes	6xas 6xav 6z9p 6z9q 6z9r 6z9s 6z9t 7adb 7adc 7add 7ade
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1pv4_A interface=58,64,66,74,78,80,102,108,109,110,112, mnltelkntpvselitlgenmglenlarmrkqdiifailkqhaksgedifgdgvleiLqdgfgFlRsadssylAgpdDiYvspsqirrfnlrtgdtisgkiRppkegERYfAllkvnevnfdkpennkilfenltplhansrlrmgstedltarvldlaspigrgqrglivappkagktmllqniaqsiaynhpdcvlmvlliderpeevtemqrlvkgevvastfdepasrhvqvaemviekakrlvehkkdviilldsitrlarayntvvpavltggvdanalhrpkrffgaarnveeggsltiiatalidtgskmdeviyeefkgtgnmelhlsrkiaekrvfpaidynrsgtrkeellttqeelqkmwilrkiihpmgeidameflinklamtktnddffemmk

  
  LCFCRCACDCYCRCECRCYCAC------              +------------------1pv4_A    
                                     +------2 
  ----------------------LT----   L   !      +------------------5h1c_B    
                                   --3 
  ------------------------RT--       !                         +6n7i_E    
                                     +-------------------------1 
  ------------------------NTTT                                 +6qem_D

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updated Mon Dec 18 05:50:03 2023