structure name | CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA (HOMEOBOX PROTEIN HOX-A9) |
reference | Laronde-Leblanc et al. 'Genes 17 2060 2003 |
source | MUS MUSCULUS |
experiment | X-ray (resolution=1.90, R-factor=0.233) |
structural superfamily | Homeodomain-like; |
sequence family | Homeobox domain; |
multimeric complexes | 1puf_AB |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RRIQNM |
Estimated binding specificities ?
contact |
A | 9 9 24 0 0 96 67 C | 9 11 24 0 0 0 9 G | 69 9 24 96 0 0 11 T | 9 67 24 0 96 0 9scan! |
Dendrogram of similar interfaces ?
matrix formatRA----RA----------------IAQTNAMC---- L +----1puf_A +----10 RG----------------------ITKGNARGRA-- L ! ! +-1zq3_P ! +--8 ----YARA----------------IAQTNA------ L +-13 +-6es3_K ! ! ------RT----------RT----IAQCNA------ L ! ! +5jlw_D ! +----------4 ------RT----------------NT--NA------ L ! +1b72_B ! --KG--RT----------------IAQCNAYA--RT L +-14 +1nk2_P ! ! +-1 ------RT----------RTQT--ITQANAVTKTKT L ! ! ! +2ld5_A ! ! +-----7 RT----RT--------------KTIAQCNA----RT L ! ! ! ! +1ig7_A ! ! ! +-5 RC----RT----------------ITQCNAACRG-- L ! +----12 +6a8r_A +----16 ! ------RA----------------ITQTNAMG---- L ! ! ! +5zjt_E ! ! +-------3 --RC--RT----------------NT--NAIT---- L ! ! +5zjt_B ! ! ------RT----------------IAKGNA------ L ! ! +2hdd_A ! ! +--------------2 ------------------------IA--NA------ +--17 ! ! +4qtr_D ! ! +-15 ------RT----------------NT--NA--RG-- L ! ! ! +1b8i_B ! ! +--------------6 ------------------------NCITNARGRG-- L ! ! +6fqq_E +-18 ! ------RA--------------KGSAQA-------- L ! ! ! +--6j5b_C ! ! +-----------------9 ------RT--------STVC--KGDCRG-------- L ! ! +--1w0t_A -19 ! ------RA----------------IAQCNAMC---- L ! +------------------------4cyc_A ! RA----RA----------------IAQTNA------ L ! +------5ego_B +------------------11 ------YTRTTGRGSTATEA--ST------------ L +------6xg8_A |
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updated Tue Dec 19 06:02:05 2023