interface graph thumbnail
legend  pdf

structure nameVND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
(HOMEOBOX PROTEIN VND)
sourceDROSOPHILA MELANOGASTER
experimentNMR
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
redundant complexes1nk2
reference complex1nk2_P
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRIQNY

Estimated binding specificities ?

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# IC=6.217 IC/col=0.777 n_of_columns=8 specificity:   
A |   0  72  24   6   0   0  48   0
C |  90   0  24   6   0   0  24  84
G |   0  18  24   6   0  96   6   6
T |   6   6  24  78  96   0  18   6
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: VND/NK-2
CAAGTGPubMed1nk3_P(2.66e-05)
AAGTGPubMed1nk3_P(2.45e-03)

Dendrogram of similar interfaces ?

matrix format



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updated Mon Dec 18 05:29:40 2023