| structure name | DNA COMPLEXED STRUCTURE OF THE KEY TRANSCRIPTION FACTOR INITIATING DEVELOPMENT IN SPORULATION BACTERIA (Stage 0 sporulation protein A) |
| reference | Varughese et al. Structure 10 1041 2002 |
| source | Bacillus subtilis |
| experiment | X-ray (resolution=2.30, R-factor=0.218) |
| structural superfamily | C-terminal effector domain of the bipartite response regulators; |
| sequence family | Sporulation initiation factor Spo0A C termin; |
| multimeric complexes | 1lq1_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | TSERRH |
Estimated binding specificities ?
| contact |  |
A | 16 0 16 0 0 C | 13 0 13 96 0 G | 13 96 13 0 96 T | 54 0 54 0 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: SPO0A | ||
| TGNCGAA | PubMed | 1lq1_D(1.02e-03) |
| TGTCGTA | PubMed | 1lq1_D(7.33e-07), 1lq1_AB(1.57e-03) |
| TTGTCGAA | PubMed | 1lq1_D(1.69e-06), 1lq1_AB(6.39e-03) |
Dendrogram of similar interfaces ?
matrix format------TT--SC--ECRG--RGHT L +---------------1lq1_D +------1 ----------------NT------ L +--2 +---------------1b72_B ! ! --------TTSGLTYART------ L +-3 +----------------------2nra_C ! ! --------TCKTTCKGTCHTST-- L --4 +-------------------------7ve5_B ! RGRTKG------------------ L +--------------------------6lui_A |
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updated Tue Dec 19 05:53:19 2023