interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameX-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP147, AT 1.9 A RESOLUTION
(HISTONE H2A.1)
referenceRichmond et al.
sourceXENOPUS LAEVIS
experimentX-ray (resolution=1.94, R-factor=0.209)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1kx3_ABCDEFGH 1kx4_ABCDEFGH 1kx5_ABCDEFGH 3b6f_ABCDEFGH 3b6g_ABCDEFGH 3lel_ABCDEF 3lel_GH 3lel_KLMOPQR 3o62_ABCDEFGH 4j8u_ABCDEFGH 4j8v_ABCDEFGH 4j8w_ABCDEFGH 4j8x_ABCDEFGH 4xuj_ABCDEFGH 5cp6_ABCDEFGH 5dnm_ABCDEFGH 5dnn_ABCDEFGH 5xf6_ABCDEFGH
redundant complexes1kx3_C 1kx4_G 3lel_M 5xf6_G 3b6f 3b6g 3o62 4j8u 4j8v 4j8w 4j8x 4xuj 5cp6 5dnm 5dnn
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RA--------RA                          +6t79_C    
                                     +-14  
  ----------RT                       !  ! +5z23_C    
                                  +-19  +-9 
  ----------RT                    !  !    +6jou_C    
                                  !  !  
  ----------RT                    !  +---6m4d_C    
                                  !  
  ----------RT                    !            +5gt0_C    
                                  !          +-1 
  ----------RG                    !        +-7 +6k1k_C    
                            +----20        ! ! 
  ----------RG              !     !     +--8 +4jjn_G    
                            !     !     !  ! 
  ----------RC              !     !     !  +6qld_g    
                            !     !  +-17  
  ----------RT              !     !  !  !     +2f8n_K    
                     +-----23     !  !  !  +-10  
  ----------RT       !      !     +-18  +-12  +6px1_C    
                     !      !        !     !  
  --------RART       !      !        !     +4x23_Q    
                     !      !        !  
  ----------RT       !      !        +---6m4g_G    
                     !      !  
  ----AT------       !      +-----------6r2v_C    
                     !  
  ----------RC       !                        +6qld_f    
                     !                      +-2 
  ----------RC       !                    +-3 +6uph_B    
                     !                    ! ! 
  ----------RT     -27                 +-11 +6ipu_B    
                     !                 !  !  
  ----------RC       !          +-----15  +4jjn_B    
                     !          !      !  
  ----AT------       !      +--22      +-4awl_B    
                     !      !   !  
  ----IT------       !      !   !        +3wkj_D    
                     !  +--24   +--------4 
  ----IT------       !  !   !            +6ipu_H    
                     !  !   !  
  ----------RG       !  !   !            +5t5k_E    
                     !  !   +------------5 
  ----AT------       !  !                +6r2v_B    
                     +-26  
  --RAETRT----          !                 +4ne1_p    
                        !  +-------------13  
  ----LT----RC          !  !              +6ipu_E    
                        !  !  
  --LC------RG          +-25              +4jjn_A    
                           !            +-6 
  ----LT----RC             !        +--16 +1aoi_E    
                           !        !   !  
  ----LT----RC             +-------21   +-1kx5_A    
                                    !  
  ----------RG                      +-----6qld_e    
                   

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updated Tue Dec 19 05:50:11 2023