3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameX-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE, NCP147, AT 1.9 A RESOLUTION
(HISTONE H2B.2)
referenceRichmond et al.
sourceXENOPUS LAEVIS
experimentX-ray (resolution=1.94, R-factor=0.209)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1eqz_ABCDEFGH 1f66_ABCDEFGH 1kx3_ABCDEFGH 1kx4_ABCDEFGH 1kx5_ABCDEFGH 1m18_ABCDEFGH 1m19_ABCDEFGH 1m1a_ABCDEFGH 1p34_ABCDEFGH 1p3a_ABCDEFGH 1p3b_ABCDEFGH 1p3f_ABCDEFGH 1p3g_ABCDEFGH 1p3i_ABCDEFGH 1p3k_ABCDEFGH 1p3l_ABCDEFGH 1p3m_ABCDEFGH 1p3o_ABCDEFGH 1p3p_ABCDEFGH 1u35_ABCDEFGH 1zbb_ABCDEFGHabcdefgh 2cv5_ABCDEFGH 2fj7_ABCDEFGH 2nzd_ABCDEFGH 3a6n_ABCDEFGH 3afa_ABCDEFGH 3an2_ABCDEFGH 3av1_ABCDEFGH 3av2_ABCDEFGH 3ayw_ABCDEFGH 3aze_ABCDEFGH 3azf_ABCDEFGH 3azg_ABCDEFGH 3azh_ABCDEFGH 3azi_ABCDEFGH 3azj_ABCDEFGH 3azk_ABCDEFGH 3azl_ABCDEFGH 3azm_ABCDEFGH 3azn_ABCDEFGH 3b6f_ABCDEFGH 3b6g_ABCDEFGH 3kuy_ABCDEFGH 3lel_ABCDEF 3lel_GH 3lel_KLMOPQR 3lz0_ABCDEFGH 3lz1_ABCDEFGH 3mgp_ABCDEFGH 3mgq_ABCDEFGH 3mgr_ABCDEFGH 3mgs_ABCDEFGH 3mnn_ABCDEFGH 3ut9_ABCDEFGH 3uta_ABCDEFGH 3utb_ABCDEFGH 3w96_ABCDEFGH 3w98_ABCDEFGH 3w99_ABCDEFGH 3wa9_ABCDEFGH 3waa_ABCDEFGH 3wtp_ABCDEFGH 3x1s_ABCDEFGH 3x1u_ABCDEFGH 4j8u_ABCDEFGH 4j8v_ABCDEFGH 4j8w_ABCDEFGH 4j8x_ABCDEFGH 4kgc_ABCDEFGH 4ld9_ABCDEFGH 4wu8_ABCDEFGH 4wu9_ABCDEFGH 4xuj_ABCDEFGH 4ym5_ABCDEFGH 4ym6_ABCDEFGH 4z5t_ABCDEFGH 5av5_ABCDEFGH 5av6_ABCDEFGH 5av8_ABCDEFGH 5av9_ABCDEFGH 5avb_ABCDEFGH 5avc_ABCDEFGH 5ay8_ABCDEFGH 5b0y_ABCDEFGH 5b0z_ABCDEFGH 5b1l_ABCDEFGH 5b1m_ABCDEFGH 5b24_ABCDEFGH 5b2i_ABCDEFGH 5b2j_ABCDEFGH 5b31_ABCDEFGH 5b32_ABCDEFGH 5b33_ABCDEFGH 5b40_ABCDEFGH 5cp6_ABCDEFGH 5cpi_ABCDEFGH 5cpj_ABCDEFGH 5cpk_ABCDEFGH 5dnm_ABCDEFGH 5dnn_ABCDEFGH 5gse_ABCDEFGHKLMNOP 5gt0_ABCDEFGH 5gtc_ABCDEFGH 5gxq_ABCDEFGH 5jrg_ABCDEFGH 5kgf_ABCDEFGH 5oxv_ABCDEFGHKLMNOPQR 5oy7_ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef 5x0x_ABCDEFGHO 5x7x_ABCDEFGH 5xf3_ABCDEFGH 5xf4_ABCDEFGH 5xf5_ABCDEFGH 5xf6_ABCDEFGH 5xm0_ABCDEFGH 5xm1_ABCDEFGH 5y0c_ABCDEFGH 5y0d_ABCDEFGH 5z23_ABCDEFGH 5z30_ABCDEFGH 5zbx_ABCDEFGH 6a5l_AB 6a5l_Eabcdef 6a5l_gh 6a5o_ABEabcdefgh 6a5p_ABEabcdefgh 6a5r_ABEabcdef 6a5t_ABEabcdef 6a5u_ABEbc 6a5u_adef 6a5u_gh 6buz_ABCDEFGHN 6c0w_ABCDEFGHK 6e0c_ABCDEFGH 6e0p_ABCDEFGH 6hkt_0123ABCDEFGHKLMNOPQRUVWXYZabcdefghklmnopqruvwxyz 6inq_ABEbcdef 6inq_gh 6ir9_ABEWabcdef 6j4w_ABEWabcdefgh 6j4x_ABEWabcdef 6j4y_ABEWabcdef 6j4z_AB 6j4z_EWabcdef 6j4z_gh 6j50_BEbc 6j50_adef 6j50_gh 6j51_ABEWabcdef 6j51_gh 6jou_ABCDEFGH 6jr0_ABCDEFGH 6jr1_ABCDEFGH 6k1i_ABCDEFGH 6k1j_ABCDEFGH 6k1k_ABCDEFGH 6kvd_ABCDEFGH 6kxv_ABCDEFGH 6l49_ABCDEFGHKLMNOPQRSTUVWXYZ 6l4a_ABCDEFGHKLMNOPQRSTUVWXYZ 6l9z_ABCDEFGHKLMNOPQRS 6la2_ACDEFGHKLMNQ 6la2_TUVWXabefgijkl 6la8_ABCDEFGHKLMNOPQRS 6la9_ABCDEFGHKLMNOPQRST 6lab_ABCDEFGH 6lab_KLMNOPQR 6lab_UV 6ler_ABCDEFGH 6ler_KLMNOPQR 6m3v_ABCDEFGHKLMNOPQR 6m44_ABCDEFGHKLMNOPQR 6m4d_ABCDEFGH 6m4g_ABCDEFGH 6m4h_ABCDEFGH 6o1d_ABCDEFGH 6om3_ABCDEFGH 6om3_LMNOPQRST 6r0c_ABCDEFGH 6r8y_ABCDEFGHL 6r8z_ABCDEFGHL 6r90_ABCDEFGHL 6r91_ABCDEFGHL 6r92_ABCDEFGHL 6r93_ABCDEFGH 6r94_ABCDEFGH 6se0_ABCDEFGH 6se6_ABCDEFGH 6see_ABCDEFGH 6sef_ABCDEFGH 6seg_ABCDEFGH 6t79_ABCDEFGH 6t7a_ABCDEFGHK 6t7b_ABCDEFGHK 6t7c_ABCDEFGHKL 6t7d_ABCDEFGHK 6t90_ABCDEFGHKL 6t93_ABCDEFGH 6tem_ABCDEFGH 6upk_ABCDEFGH 6upl_ABCDEFGHKL 6usj_ABCDEFGH 6usj_KLMNOPQR 6usj_UV 6v2k_ABCDEFGH 6wkr_CEIJKMOQRS 6x59_ABCDEFGH 6x5a_ABCDEFGH 6xjd_ABCDEFGH 6y5d_ABCDEFGH 6y5d_KMNOPQRST 6yov_ABCDEFGHKL 7a08_bcdefghi 7bwd_ABCDEFGHLM 7bxt_ABCDEFGHMN 7by0_ABCDEFGH 7c0m_ABCDEFGHKk 7c0m_abcdefgh 7cow_ABCDEFGHKLMNOPQRST 7d1z_ABCDEFGH 7d20_ABCDEFGH 7dbh_ABCDEFGH 7dbp_ABCDEFGHK 7e8d_ABCDEFGHK 7ea8_ABCDEFGH 7jo9_ABCDEFGH 7joa_ABCDEFGH 7jzv_NOPQnopq 7k5x_ABCDEFGHU 7k5y_ABCDEFGHU 7k60_ABCDEFGHU 7k61_ABCDEFGH 7k63_ABCDEFGHU 7kbd_ABCDEFGH 7kbe_ABCDEFGH 7kbf_ABCDEFGHK 7lya_ABCDEFGH 7lyb_ABCDEFGH 7lyc_ABCDEFGH 7m1x_ABCDEFGH 7nl0_ABCDEFGH 7pet_ABCDEFGHKLMNOPQRabcdefghklmnopqrsu 7peu_ABCDEFGHKLMNOPQRabcdefghu 7pev_ABCDEFGHKLMNOPQR 7pew_ABCDEFGH 7pex_abcdefghu 7pey_KLMNOPQR 7pez_eklmnopqs 7pf0_ABCDEFGHKLMNOPQRUabcdefghu 7pf2_ABCDEFGHKLMNOPQRU 7pf3_klmnopqrs 7pf4_KLMNOPQR 7pf5_abcdefghu 7pf6_ABCDEFGHU 7pfa_ABCDEFGHKLMNOPQRUabcdefghu 7pfc_ABCDEFGHKLMNOPQRU 7pfd_ABCDEFGHU 7pfe_abcdefghu 7pff_KLMNOPQR 7pft_ABCDEFGHKLMNOPQRSUabcdefghu 7pfu_ABCDEFGHKLMNOPQRSU 7pfv_ABCDEFGHU 7pfw_abcdefghu 7pfx_KLMNOPQRS 7pii_ABCDEFGH 7r5r_ABCDEFGH 7scy_ABCDEFGHK 7scz_ABCDEFGHK 7tan_ABCDEFGH 7u46_ABCDEFGHK 7u47_ABCDEFGHK 7u47_LMNOPQRSV 7u4d_ABCDEFGHK 7u4d_LMNOPQRS 7u50_ABCDEFGHK 7u51_ABCDEFGH 7u52_ABCDEFGH 7u53_ABCDEFGH 7vbm_ABCDEFGH 7vdt_ABCDEFGHK 7w9v_ABCDEFGH 7xse_ABEWabcdef 7xse_hu 7xsx_ABEWabcdejk 7xsx_hu 7xsz_ABEWabcdefgh 7xt7_ABEWabcdefjk 7xt7_hu 7xtd_ABEabcdejk 7xtd_fh 7xzx_ABCDEFGHKLMN 7xzy_ABCDEFGH 7xzz_ABCDEFGHKLMN 7y00_ABCDEFGH 7y7i_ABCDEFGH 7ywx_ABCDEFGLNVW 7zs9_257AMOQRUWXabcdefgh 7zsa_7ABMOQRUWXabcdefgh 7zsb_7ABMOQRUWXabcdefgh
redundant complexes5cpi 4j8u 6hts 4j8w 1eqz 6la8 6x5a 5cpj 3w98 6la9 3mnn 5cpk 5x0x 5avc 5b40 5ay8 4kgc 4wu8 6yov 6xjd 2fj7 5dnm 5dnn 6hkt 5b2i 6tem 6y5d 5b2j 7nl0 6o1d 6m3v 2cv5 3x1u 6m44 4wu9 7c0m 7bwd 5gxq 6v2k 7dbp 6kvd 6rny 3w99 5kgf 3afa 7tan 6jou 6m4d 6m4g 3x1s 6m4h 6fml 6k1i 6k1j 7u46 3ut9 6k1k 7u47 3w96 3uta 6inq 3av1 7u4d 3utb 3av2 5oxv 5cp6 5oy7 7d1z 7d20 6usj 6buz 7cow 6ir9 7scz 1f66 6om3 7pii 6a5l 5gtc 6a5o 6t9l 6a5p 7ywx 2nzd 6a5r 3ayw 7lya 7yyh 6a5t 7lyb 6a5u 7lyc 6t90 1p34 4ym5 6t93 4ym6 1p3a 7a08 5y0c 5b0y 1p3b 5y0d 5b0z 6jr0 1p3f 6jr1 1p3g 7bxt 1p3i 7by0 3wa9 1p3k 3mgq 1kx3 7vdt 1p3l 3mgr 1zbb 1kx4 7vdv 6j4w 1p3m 3a6n 3mgs 3kuy 7jo9 6j4x 1p3o 7joa 6j4y 1p3p 6j4z 5z30 1m18 6j50 6upk 1m19 6j51 6upl 4ld9 1m1a 3wtp 3aze 5gt0 5av6 5xf3 3azf 7r5r 5av8 5gse 5xf4 3azg 5av5 5av9 7kbd 5xf5 3azh 5z23 5avb 7kbe 3mgp 5xf6 3azi 6r0c 5b31 7kbf 3azj 5jrg 5b24 5zbx 6e0c 5b32 3azk 5b33 6x59 3azl 7ea8 3azm 6l49 6c0w 7k5x 3azn 6l4a 5x7x 3an2 7k5y 7k60 7k61 6wkr 6l9z 4j8v 6ugm 7k63 6la2 4j8x 3waa 6lab 6e0p 6uh5 7scy 6ler 7m1x 6kxv 3lz0 6t79 6v92 3lz1 6r8y 6t7a 6se0 3lel 6r8z 6t7b 6se6 7jzv 6r90 6t7c 6see 4z5t 6r91 6t7d 6sef 6r92 6seg 7e8d 6r93 4xuj 6r94
reference complex8h0v_h
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RC----------                +------------------------6uph_D    
                                !  
  --RG----------                !                         +3x1t_H    
                                !          +--------------1 
  ------------RA             +-12     +----5              +6t79_C    
                             !  !     !    ! 
  ----------RART             !  !  +--8    +--------------4x23_Q    
                             !  !  !  ! 
  ------------RG             !  +-10  +-------------------5t5k_E    
                             !     !  
  ------------RC             !     +----------------------6qld_f    
                             !  
  ------------RT          +-13            +--------------6m4g_G    
                          !  !        +---6 
  ----LT--------          !  !        !   !             +7r5r_E    
                          !  !        !   +-------------3 
  ------LA------          !  !  +-----7                 ! +6buz_A    
                          !  !  !     !                 +-2 
  ------------RA          !  !  !     !                   +7k78_E    
                          !  !  !     ! 
  ------------RT       +-14  +-11     +------------------5y0d_C    
                       !  !     !  
  ------------RC       !  !     !             +----------6qld_g    
                       !  !     !    +--------4 
  ------------KG       !  !     +----9        +----------1jfi_A    
                     -15  !          ! 
  ------------RG       !  !          +-------------------6k1k_C    
                       !  !  
  RC------------       !  +-------------------------2nqb_D    
                       !  
  --------AT----       +---------------------------6r2v_C    
                     

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updated Wed Dec 21 19:35:24 2022