interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF THE NC2-TBP-DNA TERNARY COMPLEX
(TRANSCRIPTION REGULATOR NC2 BETA CHAIN)
referenceNew York SGX Research Center for Structural Genomics (NYSGXRC)
sourceHOMO SAPIENS
experimentX-ray (resolution=2.62, R-factor=0.236)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/;
multimeric complexes1jfi_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RAAANA----RT                         +----------1jfi_B    
                           +-----------4 
  --IT--------             !           !   +------6r8y_H    
                           !           +---2 
  ------RA----             !               +------7xsx_a    
                         +-6 
  --LT----RG--           ! !                     +8eue_E    
                         ! !            +--------1 
  ------RT----           ! !  +---------3        +7wlr_E    
                       +-7 !  !         ! 
  ------RT----         ! ! +--5         +---------7lyb_G    
                       ! !    ! 
  --LT--RC----       +-8 !    +-------------------5xm1_A    
                     ! ! ! 
  ------RG----       ! ! +------------------------7e9c_G    
                   --9 ! 
  ------RA----       ! +-------------------------6t7a_C    
                     ! 
  ------RG----       +---------------------------5t5k_E    
                   

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updated Tue Dec 19 05:47:04 2023