1je8_EF : 3D-footprint complex

structure name	TWO-COMPONENT RESPONSE REGULATOR NARL/DNA COMPLEX: DNA BENDING FOUND IN A HIGH AFFINITY SITE
reference	Kaczor-Grzeskowiak et al. Nat.Struct.Biol. 9 771 2002
source	Escherichia coli
experiment	X-ray (resolution=2.12, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	1je8_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1je8_E interface=36,37,39,40,41,43, erdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif > 1je8_F interface=35,36,38,39,40,42, rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif
interface signature	STKVHK/STKVHK

Estimated binding specificities ?

readout + contact

# IC=11.096 IC/col=0.694 n_of_columns=16

specificity:

A |   0  54   0   0  24  96  24  24  24  24   0  24   0   0  13  96
C |   0  13  96  96  24   0  24  24  24  24   0  24   0   0  13   0
G |   0  16   0   0  24   0  24  24  24  24   0  24  96  96  16   0
T |  96  13   0   0  24   0  24  24  24  24  96  24   0   0  54   0

scan!

home
updated Fri Dec 15 09:16:21 2023