interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameDNA G-QUARTETS IN A 1.86 A RESOLUTION STRUCTURE OF AN OXYTRICHA NOVA TELOMERIC PROTEIN-DNA COMPLEX
(TELOMERE-BINDING PROTEIN BETA SUBUNIT)
referenceHorvath et al.
sourceSTERKIELLA NOVA
experimentX-ray (resolution=1.86, R-factor=0.232)
structural superfamilyNucleic acid-binding proteins;
sequence familyTelomerebinding protein beta subunit TEBP;
redundant complexes1otc
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  KTEGPGHGLG------FG--FGYGYTRGKG   L                                 +2i0q_B    
                                                +--------------------1 
  KTEGPGHGLG------FG--FGYGYGRGKG   L   +--------2                    +1jb7_B    
                                       !        ! 
  ------TTATNTTTATFTNT----------   L --3        +--------------------6bhx_B    
                                       ! 
  --EGPGHGLG------FG--FGYTYTRTKT   L   +-----------------------------1ph6_B    
                                     

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updated Mon Dec 18 05:13:16 2023