interface graph thumbnail
legend  pdf

structure nameSOLUTION STRUCTURE OF THE NON-SEQUENCE-SPECIFIC HMGB PROTEIN NHP6A IN COMPLEX WITH SRY DNA
(NONHISTONE CHROMOSOMAL PROTEIN 6A)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyHMG-box;
sequence familyHMG high mobility group box;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTRTRRSYMF

Estimated binding specificities ?

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# IC=7.232 IC/col=1.033 n_of_columns=7 specificity:   
A |  12  96   2   0   0   8   0
C |  12   0   2   0   0   8   0
G |  60   0   2   0  96   8   0
T |  12   0  90  96   0  72  96
scan!

Dendrogram of similar interfaces ?

matrix format
  
  KCRC--YTMALTRA--VCTG--AAVCEC   L               +1qrv_A    
                                     +-----------2 
  --RC--FAFTCG----IC--VGAG----   L   !           +2gzk_A    
                                   --3 
  --RCNTFTMA--RAHGNT----SA----   L   !            +3f27_D    
                                     +------------1 
  --RGNTFTMA--RT--NGRT--SA----   L                +7m5w_A    
                                   

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updated Tue Dec 19 05:45:45 2023