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structure nameCRYSTAL STRUCTURE OF NAEI COMPLEXED WITH 17MER DNA
(TYPE II RESTRICTION ENZYME NAEI)
referenceColandene et al. Nat.Struct.Biol. 8 665 2001
sourceLECHEVALIERIA AEROCOLONIGENES
experimentX-ray (resolution=2.40, R-factor=?)
structural superfamilyRestriction endonuclease-like;
sequence familyRestriction endonuclease NaeI;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTTMNRDKR

Estimated binding specificities ?

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# IC=4.879 IC/col=0.813 n_of_columns=6 specificity:   
A |   8   8   2   0  33   2
C |  73  72   0   2  51   3
G |   7   8  93  94   6  89
T |   8   8   1   0   6   2
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Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: NAEI
GCCGGCPubMed1iaw_B(1.12e-03), 1iaw_AB(3.67e-09)
GGGTGCCGGCAGGGPubMed1iaw_AB(9.20e-05)
TTTCGCCGGCGTTTPubMed1iaw_B(2.61e-04), 1iaw_AB(1.90e-11)
CGGCCGPubMed1iaw_B(1.12e-03), 1iaw_AB(6.35e-03)
CCCGGGPubMed1iaw_AB(6.35e-03)

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updated Mon Dec 18 05:11:14 2023