1gm5_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	STRUCTURE OF RECG BOUND TO THREE-WAY DNA JUNCTION (RECG)
reference	Singleton et al. 'Cell(Cambridge,Mass.)' 107 79 2001
source	THERMOTOGA MARITIMA
experiment	X-ray (resolution=3.24, R-factor=0.275)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;Nucleic acid-binding proteins;RecG, N-terminal domain;
sequence family	DEAD/DEAH box helicase; Helicase conserved Cterminal domain; OBfold nucleic acid binding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1gm5_A interface=179,198,199,200,234, ftsslflwgealptlleeflnevekmlknqvntrrihqllkelddpllenkdleeklqafldyvkeipnlpearkryriqkslemieklrswflidylecsgeevdlstdiqyakgvgpnrkkklkklgietlrdlleffprdyedrrkifklndllpgekvttqgkivsvetkkfqnMniltavlsdglvhvplkwFNQdylqtylkqltgkevfvtgtvksnaytgqyeihNaevtpkegeyvrrilpiyrltsgisqkqmrkifeenipslccslketlperilekrkllgvkdayygmhfpktfyhlekarerlayeelfvlqlafqkirkerekhggipkkiegklaeefikslpfkltnaqkrahqeirndmisekpmnrllqgdvgsgktvvaqlaildnyeagfqtafmvptsilaiqhyrrtvesfskfnihvalligattpsekekiksglrngqidvvigthaliqedvhfknlglviideqhrfealmnkgkmvdtlvmsatpiprsmalafygdldvtvidemppgrkevqtmlvpmdrvnevyefvrqevmrggqafivypliksavemyeylskevfklglmhgrlsqeekdrvmlefaegrydilvsttvievgidvpranvmvienperfglaqlhqlrgrvgrggqeaycflvvgdvgeeamerlrfftlntdgfkiaeydlktrgpgekqhglsgfkvadlyrdlkllew

  
  KAFAMGIAKAFGNCQCYGEANG------------------------                                     +---------------1gm5_A    
                                                                          +----------1 
  ------------------------------RC--HC--QT------                        +-2          +---------------6m6b_M    
                                                                        ! ! 
  ------------------------------------------AG--                      +-3 +--------------------------6o8h_A    
                                                                      ! ! 
  ----------------------------------------NA--LA   L                +-4 +---------------------------3v4r_B    
                                                                    ! ! 
  ----------------------------------VC----------                  +-5 +----------------------------2wwy_B    
                                                                  ! ! 
  ----------------------------------------RC----                +-6 +----------------------------6ryr_W    
                                                                ! ! 
  ----------------------------------------KCHA--              +-7 +-----------------------------6ro4_A    
                                                              ! ! 
  ----------------------CGNCSGKG----------------   L        +-8 +-----------------------------6crm_A    
                                                            ! ! 
  --------------------------------QT------------          +-9 +-----------------------------6ne3_W    
                                                          ! ! 
  ------------------------------------RT--------       +-10 +-----------------------------5vvr_M    
                                                       !  !  
  --------------------------------ST------------     -11  +-----------------------------6jyl_K    
                                                       !  
  ------------------------------------RG--------       +-----------------------------6ftx_W

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updated Tue Dec 19 05:40:49 2023