structure name | STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA (PROTEIN FOKI RESTRICTION ENDONUCLEASE) |
reference | Schildkraut et al. |
source | PLANOMICROBIUM OKEANOKOITES |
experiment | X-ray (resolution=2.80, R-factor=0.214) |
structural superfamily | Restriction endonuclease-like;"Winged helix" DNA-binding domain; |
sequence family | Restriction endonuclease FokI, C termi; Restriction endonuclease FokI, recogni; Restriction endonuclease FokI, catalyt; |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | QNRQDNWNNESKRM |
Estimated binding specificities ?
readout + contact |
A | 10 0 0 93 0 0 47 C | 69 0 0 0 0 1 19 G | 15 96 89 1 2 95 13 T | 2 0 7 2 94 0 17scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: FOKI | ||
GGATG | PubMed | 1fok_A(7.08e-07) |
CATCC | PubMed | 1fok_A(7.08e-07) |
CGATGC | PubMed | 1fok_A(3.39e-03) |
CATTC | PubMed | 1fok_A(6.33e-03) |
GGATGC | PubMed | 1fok_A(6.29e-06) |
CACCC | PubMed | 1fok_A(5.92e-03) |
Dendrogram of similar interfaces ?
matrix formatQANARGQGDTNTWCNGNCECSA--KG--RGMG---------------------------------------------- L +------------------------1fok_A +--7 --------------------------------------RGRTKG---------------------------------- L +-8 +------------------------6lui_A ! ! ------------------------------------------------------NTTCTA----------------RT L +-10 +---------------------------5zux_A ! ! ----------------------------------------------SGQG--YCNC---------------------- +-11 +----------------------------2ve9_C ! ! ----------------------------------------------------------------YG------------ ! ! +--2heo_D +-12 +-------------------------3 ----------------------KTPTTTFT------------------------------------------------ ! ! +--4ass_H ! ! ------------------------------------------------------------IA--KGNA---------- L ! +-----------------------------2hdd_A ! ------------------------------------MG------------TGQAAT------SARG------------ L +-13 +--2p5l_D ! ! +--------------2 --------------------------------------------DT------RGRC----TT--KT--------RT-- L ! ! +---------5 +--2o9l_A ! ! ! ! ----------------------------------RT----------------STVC--KGDC--RG------------ L ! ! ! +-----------------1w0t_A ! +-9 ------------------------------------------------------------NC--ITNARGRG------ L ! ! +---------------------6fqq_E +-14 +-----6 --------------------------------RA--------------------------IT--QTNAMG-------- L ! ! ! +---------------5zjt_E ! ! +-----4 ------------------------------------------------------------IA----NA---------- ! ! ! +4qtr_D -15 ! +--------------1 ------------------------------------------------------------IT--QCNAACRG------ L ! ! +6a8r_A ! ! ------------------------------------------------------------NT----NA--RG------ L ! +-----------------------------1b8i_B ! ----------------------------------------------------------KTIA--QCNA----RT---- L +-----------------------------1ig7_A |
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updated Tue Dec 19 05:38:46 2023