structure name | DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX (DIPHTHERIA TOX REPRESSOR) |
reference | Vanderspek et al. |
source | Corynebacterium diphtheriae |
experiment | X-ray (resolution=3.00, R-factor=?) |
structural superfamily | Iron-dependent repressor protein, dimerization domain;"Winged helix" DNA-binding domain; |
sequence family | Iron dependent repressor, Nterminal D; Iron dependent repressor, metal bindin; MarR family; |
multimeric complexes | 1c0w_ABCD 1ddn_ABCD |
redundant complexes | 1c0w_D |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | SPTSQR |
Estimated binding specificities ?
contact |
A | 7 7 96 7 0 7 C | 9 7 0 7 0 7 G | 7 9 0 73 96 9 T | 73 73 0 9 0 73scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: TOX REPRESSOR | ||
ACAATTAGG | PubMed | 1ddn_B(3.90e-05), 1c0w_D(3.90e-06) |
ATAATTAGG | PubMed | 1ddn_B(3.90e-05), 1c0w_D(3.90e-06) |
Dendrogram of similar interfaces ?
matrix format------------ST--PTTCSTQC------RA-------- L +1ddn_B +---------------------1 ------------ST--PTTC--QG------RG-------- L ! +1f5t_A ! ----------------------------YG---------- ! +2heo_D +-6 +----2 ------LT------RTSGTGQTRG---------------- L ! ! +----------3 +2xro_E ! ! ! ! ----------------TTHT--KG----------RC---- L ! ! +----4 +----7b0c_A +---7 ! ! ! --------SGQG--YCNC---------------------- ! ! +-5 +---------------2ve9_C ! ! ! --------TC--STKTPTTTFT------------------ +-8 ! +--------------------4ass_H ! ! ! ------------DCLT--AGTTRG------RG-------- L ! ! +-----------------------5h3r_A +-9 ! RGRTKG------------------------------YGKC L ! ! +---------------------------6lui_A -10 ! --------------------NAST--RGHT--ST------ L ! +----------------------------3g73_A ! ------------------KT--RGAT--RGYA-------- L +----------------------------4iri_A |
home
updated Tue Dec 19 05:31:32 2023