structure name | RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD (BSOBI RESTRICTION ENDONUCLEASE) |
reference | van der Woerd et al. |
source | Geobacillus stearothermophilus |
experiment | X-ray (resolution=1.70, R-factor=0.190) |
structural superfamily | Restriction endonuclease-like; |
multimeric complexes | 1dc1_AB |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | KRNDAEH |
Estimated binding specificities ?
readout + contact |
A | 0 0 0 0 38 C | 96 20 96 0 19 G | 0 0 0 96 19 T | 0 76 0 0 20scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: BSOBI | ||
CTCGAG | PubMed | 1dc1_A(1.01e-06), 1dc1_AB(1.24e-09) |
CCCGGG | PubMed | 1dc1_A(1.30e-02), 1dc1_AB(1.24e-02) |
Dendrogram of similar interfaces ?
matrix formatKG--------RCNG----DGAG------ECHG-- L +---------------------1dc1_A +---2 ----KG----------SG----RGSADCRG---- L ! +---------------------3dvo_D --3 --RG--QGFCACKG----RGKGECVC------RT L ! +--------------------6eko_A +----1 ------QG--VCRCKG------------------ L +--------------------5dwa_A |
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updated Tue Dec 19 05:30:43 2023