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structure nameA PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)
referenceRosenberg et al. 'To ? ? ?
experimentX-ray (resolution=1.80, R-factor=0.243)
structural superfamilyRestriction endonuclease-like;
sequence familyRestriction endonuclease EcoRI;
redundant complexes1ckq_A 1eri_A 1qps_A 1qrh_A 1qri_A 2oxv_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQMANAR

Estimated binding specificities ?

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# IC=2.003 IC/col=0.501 n_of_columns=4 specificity:   
A |  60   0  19  12
C |  12   0  19  60
G |  12   0  19  12
T |  12  96  39  12
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: ECO RI
GAATTCPubMed1cl8_A(3.54e-04), 2oxv_A(1.21e-07), 1ckq_A(1.24e-07), ... (total=7)
GAATTAPubMed1cl8_A(3.54e-04), 2oxv_A(1.21e-07), 1ckq_A(1.24e-07), ... (total=7)
CAATTNPubMed2oxv_A(3.58e-04), 1ckq_A(3.59e-04), 1qrh_A(4.05e-04), ... (total=6)
GGATTTPubMed2oxv_A(2.64e-03), 1ckq_A(2.68e-03), 1qps_A(2.68e-03), ... (total=5)
GGAATTCCPubMed1cl8_A(1.77e-03), 2oxv_A(1.64e-06), 1ckq_A(1.69e-06), ... (total=7)
GAATTTPubMed1cl8_A(3.54e-04), 2oxv_A(1.21e-07), 1ckq_A(1.24e-07), ... (total=7)
AAATTTPubMed2oxv_A(3.58e-04), 1ckq_A(3.59e-04), 1qrh_A(4.05e-04), ... (total=6)
TCGCGAATTCGCGPubMed1cl8_A(8.54e-03), 2oxv_A(1.73e-05), 1ckq_A(1.77e-05), ... (total=7)

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updated Tue Dec 19 05:29:40 2023