1ckt_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX (HIGH MOBILITY GROUP 1 PROTEIN)
reference	Ohndorf et al. Nature 399 708 1999
source	Rattus norvegicus
experiment	X-ray (resolution=2.50, R-factor=0.238)
structural superfamily	HMG-box;
sequence family	HMG high mobility group box;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ckt_A interface=9,13,31,35, kprgkmssYaffVqtcreehkkkhpdasvnFsefSkkcserwktmsakekgkfedmakadkaryeremkty
interface signature	YVFS

Estimated binding specificities ?

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# IC=2.982 IC/col=0.745 n_of_columns=4

specificity:

A |  19  13   0   0
C |  19  13  96  96
G |  39  13   0   0
T |  19  57   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RC--YTMALTRA--VCTG--AAVCEC   L                      +--1qrv_A    
                                              +-------2 
  RCNTFTMA--RAHGNT----SA----   L              !       !  +3f27_D    
                                   +----------3       +--1 
  RC--FAFTCG----IC--VGAG----   L   !          !          +2gzk_A    
                                 --4          ! 
  RGNTFTMA--RT--NGRT--SA----   L   !          +----------7m5w_A    
                                   ! 
  ----YA--------FT----SG----       +---------------------5ze0_N

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updated Tue Dec 19 05:29:34 2023