Estimated binding specificities ?

structure nameDORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA
(TRANSCRIPTION FACTOR GAMBIF1)
referenceBarillas-Mury et al. 'Structure 7 841 1999
sourceAnopheles gambiae
experimentX-ray (resolution=2.70, R-factor=0.219)
structural superfamilyp53-like transcription factors;
sequence familyRel homology domain RHD;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
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# IC=5.637 IC/col=1.127 n_of_columns=5 specificity:   
A |   0   0   0   0  12
C |   0   0   0   0  12
G |   0  96  96  96  12
T |  96   0   0   0  60
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RGRG----EG--RG----   L                       +1bvo_A    
                                             +-3 
  RGRGYTCTEC--------   L            +--------4 +1gji_A    
                                    !        ! 
  RCRCYC--EC------HC   L            !        +--1svc_P    
                           +--------7 
  RGRG----EC--------   L   !        !           +2ram_A    
                           !        !   +-------1 
  RGRGYTCTEC--RT----   L   !        !   !       +2o61_A    
                           !        +---6 
  RGRGYTCCEC--------   L --8            !    +--2v2t_A    
                           !            +----5 
  RGRGYACCEC----SAHG   L   !                 !  +7cli_B    
                           !                 +--2 
  RGRGYA--EC------HG   L   !                    +7w7l_B    
                           ! 
  RG--YT--TTEC----RG   L   +--------------------1imh_C

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updated Tue Dec 19 05:27:52 2023