| structure name | MOUSE GABP ALPHA/BETA DOMAIN BOUND TO DNA (PROTEIN GA BINDING PROTEIN ALPHA) |
| reference | Batchelor et al. Science 279 1037 1998 |
| source | MUS MUSCULUS |
| experiment | X-ray (resolution=2.15, R-factor=?) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Etsdomain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KRARY |
Estimated binding specificities ?
| readout + contact |  |
A | 12 0 0 84 96 12 C | 60 0 0 12 0 12 G | 12 96 96 0 0 60 T | 12 0 0 0 0 12scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: GABP | ||
| CCGGAAGT | PubMed | 1awc_A(6.34e-03) |
| CAGGAAGT | PubMed | 1awc_A(6.34e-03) |
| CGGAA | PubMed | 1awc_A(3.54e-04) |
| ACTTCCG | PubMed | 1awc_A(3.37e-03) |
| CCGGAA | PubMed | 1awc_A(1.12e-03) |
| CGGAAA | PubMed | 1awc_A(1.12e-03) |
| CACTTCCG | PubMed | 1awc_A(6.34e-03) |
| GGAAG | PubMed | 1awc_A(3.54e-04) |
| GAGGAA | PubMed | 1awc_A(1.12e-03) |
Dendrogram of similar interfaces ?
matrix format------KT--RGAT--RGYT------------ L +--1awc_A +----------5 ------KT--RG----RGYA------------ L ! ! +4l18_B ! +-4 ------KT--RG----RGYA------------ L +------7 +3wts_C ! ! ----DCKT--RG----RGYA------------ L ! ! +1dux_F +-9 +------------3 ----ECKT--RGAT--RGNT------------ L ! ! +1pue_E +-10 ! ----DCKT--RGST--RGYA------------ L ! ! +--------------------4bnc_A +-11 ! ----DCKT--RGAT--RCYA------------ L ! ! +----------------------5e8i_D ! ! ----DCKT--RG----RGYA----KA------ L ! +-----------------------5jvt_A ! ------KT--RGSA--RGQA----------RA L ! +1yo5_C +-13 +---------1 ------KT--RGAT--RGYA------------ L ! ! +---------6 +4iri_A ! ! ! ! ----------NT--RGCT--NGST-------- L ! ! +---8 +---------1if1_B ! ! ! ! ------KT--RG----RAYA------------ L +-14 +-12 +-------------------6vge_A ! ! ! ------STVT------RGQTNT--MT------ L ! ! ! +5d5v_B ! ! +-----------------------2 ------ST--------RTQT----KG------ +-15 ! +5d5w_B ! ! ! KTHG---------------------------- ! ! +--------------------------5hdn_C +-16 ! ----EAKT--RGAT--RGYA----------RT L ! ! +--------------------------3jtg_A +-17 ! ----ECKT--RGAT--RGHT----------RA L ! ! +---------------------------4mhg_A +-18 ! --------------------------YGKC-- L ! ! +---------------------------6lui_A -19 ! ----DCKT--RG----RGYA------------ L ! +----------------------------3zp5_A ! ----EC----RG----RGYC------------ L +----------------------------2stw_A |
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updated Tue Dec 19 05:25:27 2023