; matrix-quality  -v 1 -m /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -matrix_format tab -seq db_sites /export/internal_use2/amedina/matrix_eval/data/Sites_FNA_R/PhoB.fna -perm db_sites 0 -scanopt db_sites '-uth rank_pm 1' -seq allup-noorf /export/internal_use2/amedina/matrix_eval/data/sequences/allup/Escherichia_coli_K12_allup-noorf_min30_max500.fasta -perm allup-noorf 1 -roc_ref theor -img_format png,pdf -graph_option '-title1 PhoB' -graph_option '-title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab' -graph_option '-xgstep1 5 -xgstep2 1' -graph_option '-ymin 1.0e-7 -ymax 1' -graph_option '-xmin -50 -xmax 30' -roc_option '-gstep1 0.1 -gstep2 0.05' -roc_option '-title1 PhoB' -roc_option '-title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab' -2str -pseudo 1 -bgfile /export/space2/rsa-tools/data/genomes/Escherichia_coli_K12/oligo-frequencies/1nt_upstream-noorf_Escherichia_coli_K12-ovlp-1str.freq -th_prior /export/space2/rsa-tools/data/genomes/Escherichia_coli_K12/oligo-frequencies/1nt_upstream-noorf_Escherichia_coli_K12-ovlp-1str.freq -o /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality -graph_option '-colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab ' -roc_option '-colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab'
; Sequence sets (name, permutations, file);	db_sites	0	/export/internal_use2/amedina/matrix_eval/data/Sites_FNA_R/PhoB.fna
;	allup-noorf	1	/export/internal_use2/amedina/matrix_eval/data/sequences/allup/Escherichia_coli_K12_allup-noorf_min30_max500.fasta
; LOO partial matrices

; 2010_03_11.195906	running matrix-scan
;	Sequence type         	matrix_sites_loo


; 2010_03_11.195906	Computing score distribution
;	Sequence type         	db_sites
;	Sequence type         	db_sites
;	Sequence file         	/export/internal_use2/amedina/matrix_eval/data/Sites_FNA_R/PhoB.fna
;	Type-specific options 	 -uth rank_pm 1
;Command:              
/export/space2/rsa-tools/perl-scripts/matrix-scan -v 1 -i /export/internal_use2/amedina/matrix_eval/data/Sites_FNA_R/PhoB.fna -m /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -matrix_format tab -return sites -decimals 1 -2str -bgfile /export/space2/rsa-tools/data/genomes/Escherichia_coli_K12/oligo-frequencies/1nt_upstream-noorf_Escherichia_coli_K12-ovlp-1str.freq  -uth rank_pm 1 | grep -v '^;' | grep -v '^#' | cut -f 8  | /export/space2/rsa-tools/perl-scripts/classfreq -v 1 -ci 0.1 -min -48.9 | cut -f 1,4,5,6,9  > /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_scan_db_sites_score_distrib.tab


; 2010_03_11.195907	Computing score distribution
;	Sequence type         	allup-noorf
;	Sequence type         	allup-noorf
;	Sequence file         	/export/internal_use2/amedina/matrix_eval/data/sequences/allup/Escherichia_coli_K12_allup-noorf_min30_max500.fasta
;Command:              
/export/space2/rsa-tools/perl-scripts/matrix-scan -v 1 -i /export/internal_use2/amedina/matrix_eval/data/sequences/allup/Escherichia_coli_K12_allup-noorf_min30_max500.fasta -m /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -matrix_format tab -return sites -decimals 1 -2str -bgfile /export/space2/rsa-tools/data/genomes/Escherichia_coli_K12/oligo-frequencies/1nt_upstream-noorf_Escherichia_coli_K12-ovlp-1str.freq | grep -v '^;' | grep -v '^#' | cut -f 8  | /export/space2/rsa-tools/perl-scripts/classfreq -v 1 -ci 0.1 -min -48.9 | cut -f 1,4,5,6,9  > /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_scan_allup-noorf_score_distrib.tab


; 2010_03_11.200511	Computing score distribution
;	Sequence type         	allup-noorf_perm_col_1
;	Sequence type         	allup-noorf_perm_col_1
;	Sequence file         	/export/internal_use2/amedina/matrix_eval/data/sequences/allup/Escherichia_coli_K12_allup-noorf_min30_max500.fasta
;Command:              
/export/space2/rsa-tools/perl-scripts/matrix-scan -v 1 -i /export/internal_use2/amedina/matrix_eval/data/sequences/allup/Escherichia_coli_K12_allup-noorf_min30_max500.fasta -m /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_matrix_perm_col_1.tab -matrix_format tab -return sites -decimals 1 -2str -bgfile /export/space2/rsa-tools/data/genomes/Escherichia_coli_K12/oligo-frequencies/1nt_upstream-noorf_Escherichia_coli_K12-ovlp-1str.freq | grep -v '^;' | grep -v '^#' | cut -f 8  | /export/space2/rsa-tools/perl-scripts/classfreq -v 1 -ci 0.1 -min -48.9 | cut -f 1,4,5,6,9  > /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_scan_allup-noorf_perm_col_1_score_distrib.tab

;
; XYgraph command
/export/space2/rsa-tools/perl-scripts/XYgraph  -i /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa.tab -format png -lines -pointsize 0   -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab  -xcol 1 -ycol 2,3,4,5,6 -ymin 0  -ymax 1  -xgstep1 5 -xgstep2 1 -ygstep1 0.1 -ygstep2 0.02 -gp 'set size ratio 0.5'  -title1 'PhoB_1gxp_AB' -legend  -xsize 800 -ysize 400  -xleg1 'matrix score'  -yleg1 'Frequency (inverse cumulative) '    -o /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa.png
;
; XYgraph command
/export/space2/rsa-tools/perl-scripts/XYgraph  -i /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa.tab -format png -lines -pointsize 0   -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab  -xcol 1 -ycol 2,3,4,5,6 -xgstep1 5 -xgstep2 1 -ymax 1 -ylog 10 -gp 'set size ratio 0.5'  -title1 'PhoB_1gxp_AB' -legend  -xsize 800 -ysize 400  -xleg1 'matrix score'  -yleg1 'Frequency (inverse cumulative) '    -o /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa_logy.png
;
; XYgraph command
/export/space2/rsa-tools/perl-scripts/XYgraph -xlog 10  -i /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa.tab -format png -lines -pointsize 0   -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab  -xcol 2 -ycol 2,3,4,5,6 -ygstep1 0.1 -ygstep2 0.02 -ymax 1  -xmax 1  -title1 'PhoB_1gxp_AB' -legend  -xsize 400 -ysize 400  -xleg1 'matrix score'  -yleg1 'Frequency (inverse cumulative) '   -gstep1 0.1 -gstep2 0.05 -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab -o /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa_roc_xlog.png -xleg1 'FPR (Reference = theor)'  -yleg1 'Site Sn + other distributions' 
;
; XYgraph command
/export/space2/rsa-tools/perl-scripts/XYgraph  -i /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_theorical_score_distrib_compa.tab -format png -lines -pointsize 0   -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab  -xcol 1 -ycol 2 -ymin 0  -ymax 1  -gp 'set size ratio 0.5'  -title1 'PhoB_1gxp_AB' -legend  -xsize 400 -ysize 400  -xleg1 'matrix score'  -yleg1 'Frequency (inverse cumulative) '    -o /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_theorical_score_distrib_compa.png
;
; XYgraph command
/export/space2/rsa-tools/perl-scripts/XYgraph  -i /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_theorical_score_distrib_compa.tab -format png -lines -pointsize 0   -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab  -xcol 1 -ycol 2 -ymax 1 -ylog 10 -gp 'set size ratio 0.5'  -title1 'PhoB_1gxp_AB' -legend  -xsize 400 -ysize 400  -xleg1 'matrix score'  -yleg1 'Frequency (inverse cumulative) '    -o /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_theorical_score_distrib_compa_logy.png
;
; XYgraph command
/export/space2/rsa-tools/perl-scripts/XYgraph  -i /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa.tab -format pdf -lines -pointsize 0   -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab  -xcol 1 -ycol 2,3,4,5,6 -ymin 0  -ymax 1  -xgstep1 5 -xgstep2 1 -ygstep1 0.1 -ygstep2 0.02 -gp 'set size ratio 0.5'  -title1 'PhoB_1gxp_AB' -legend  -xsize 800 -ysize 400  -xleg1 'matrix score'  -yleg1 'Frequency (inverse cumulative) '    -o /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa.pdf
;
; XYgraph command
/export/space2/rsa-tools/perl-scripts/XYgraph  -i /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa.tab -format pdf -lines -pointsize 0   -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab  -xcol 1 -ycol 2,3,4,5,6 -xgstep1 5 -xgstep2 1 -ymax 1 -ylog 10 -gp 'set size ratio 0.5'  -title1 'PhoB_1gxp_AB' -legend  -xsize 800 -ysize 400  -xleg1 'matrix score'  -yleg1 'Frequency (inverse cumulative) '    -o /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa_logy.pdf
;
; XYgraph command
/export/space2/rsa-tools/perl-scripts/XYgraph -xlog 10  -i /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa.tab -format pdf -lines -pointsize 0   -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab  -xcol 2 -ycol 2,3,4,5,6 -ygstep1 0.1 -ygstep2 0.02 -ymax 1  -xmax 1  -title1 'PhoB_1gxp_AB' -legend  -xsize 400 -ysize 400  -xleg1 'matrix score'  -yleg1 'Frequency (inverse cumulative) '   -gstep1 0.1 -gstep2 0.05 -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab -o /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa_roc_xlog.pdf -xleg1 'FPR (Reference = theor)'  -yleg1 'Site Sn + other distributions' 
;
; XYgraph command
/export/space2/rsa-tools/perl-scripts/XYgraph  -i /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_theorical_score_distrib_compa.tab -format pdf -lines -pointsize 0   -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab  -xcol 1 -ycol 2 -ymin 0  -ymax 1  -gp 'set size ratio 0.5'  -title1 'PhoB_1gxp_AB' -legend  -xsize 400 -ysize 400  -xleg1 'matrix score'  -yleg1 'Frequency (inverse cumulative) '    -o /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_theorical_score_distrib_compa.pdf
;
; XYgraph command
/export/space2/rsa-tools/perl-scripts/XYgraph  -i /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_theorical_score_distrib_compa.tab -format pdf -lines -pointsize 0   -title1 PhoB -title2 /export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -colors /export/internal_use2/amedina/matrix_eval/data/quality_colors.tab  -xcol 1 -ycol 2 -ymax 1 -ylog 10 -gp 'set size ratio 0.5'  -title1 'PhoB_1gxp_AB' -legend  -xsize 400 -ysize 400  -xleg1 'matrix score'  -yleg1 'Frequency (inverse cumulative) '    -o /export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_theorical_score_distrib_compa_logy.pdf
; Input files
;	bg_file                      	/export/space2/rsa-tools/data/genomes/Escherichia_coli_K12/oligo-frequencies/1nt_upstream-noorf_Escherichia_coli_K12-ovlp-1str.freq
;	matrix                       	/export/internal_use2/amedina/matrix_eval/data/Matrices_contact/PhoB/PhoB_1gxp_AB.tab
; Sequence files
;	allup-noorf                  	/export/internal_use2/amedina/matrix_eval/data/sequences/allup/Escherichia_coli_K12_allup-noorf_min30_max500.fasta
;	db_sites                     	/export/internal_use2/amedina/matrix_eval/data/Sites_FNA_R/PhoB.fna
; Output files
;	allup-noorf                  	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_scan_allup-noorf_score_distrib.tab
;	allup-noorf_matrix_perm_col_all	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_allup-noorf_matrix_perm_col_all_1.tab
;	allup-noorf_perm_col_1       	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_scan_allup-noorf_perm_col_1_score_distrib.tab
;	db_sites                     	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_scan_db_sites_score_distrib.tab
;	db_sites_matrix_perm_col_all 	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_db_sites_matrix_perm_col_all_0.tab
;	distrib_compa                	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_score_distrib_compa
;	index                        	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_index.html
;	log                          	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_log.txt
;	matrix_info                  	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_matrix_info.txt
;	matrix_logo                  	PhoB_1gxp_AB_m1_logo
;	matrix_perm_col_1            	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_matrix_perm_col_1.tab
;	matrix_rc                    	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_rc
;	matrix_rc_logo               	PhoB_1gxp_AB_m1_logo_rc
;	matrix_sites_loo             	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_matrix_sites_loo.tab
;	matrix_sites_loo_distrib     	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_scan_matrix_sites_loo_score_distrib.tab
;	matrix_tab                   	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_matrix.tab
;	prefix                       	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality
;	th_distrib_compa             	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_theorical_score_distrib_compa
;	theoretical_distrib          	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_theor_score_distrib.tab
; Directories
;	output                       	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab
; Matrix permutations per sequence type
;	db_sites             	0
;	allup-noorf          	1
; Distributions
;	1                    	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_scan_matrix_sites_loo_score_distrib.tab
;	2                    	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_scan_db_sites_score_distrib.tab
;	3                    	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_scan_allup-noorf_score_distrib.tab
;	4                    	/export/internal_use2/amedina/matrix_eval/results/contact/matrix_quality_200100311/PhoB/PhoB_1gxp_AB.tab/PhoB_1gxp_AB.tab_quality_scan_allup-noorf_perm_col_1_score_distrib.tab
; Job started 2010_03_11.195435
; Job done    2010_03_11.201141